Archives for category: Business and Technology

By creating genetically engineered fish, two independent groups have identified genes in an autism hotspot on chromosome 16 that influence head size and brain development. One of the studies appears today in Nature.

A 29-gene stretch of chromosome 16 known as 16p11.2, or 16p, is deleted or duplicated in roughly one percent of individuals with autism and duplicated in some individuals with schizophrenia. Researchers have struggled to sort out which genes in the region contribute to features of these disorders.

Using zebrafish allows for an unbiased screen of individual genes, says Nicholas Katsanis, professor of cell biology at Duke University in Durham, North Carolina, and lead investigator of the Nature study. “We tested all of them with exactly same protocol, with no prior expectation of what we were going to find,” he says.

His study shows that suppressing a little-known gene called KCTD13 in zebrafish leads to a 20 percent increase in head size. Conversely, expressing too much of the gene leads to a 20 percent decrease in head size.

This seems to mirror what happens in people. Individuals lacking one copy of 16p often have abnormally large heads, dubbed macrocephaly, whereas those with an extra copy tend to have abnormally small heads, or microcephaly.

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SFARI, May 2012.

The study was published earlier this month in Nature Methods.

Many thanks to Andrea Facheris of Soundtrack4u for granting permission to use the music in the video. The song is called “Symphony 5″ (a reworking of Beethoven’s), by the Robot Symphony Orchestra.

The Last Word on Nothing, May 2012.

When I want to learn about a certain drug treatment, I typically begin with a search for mentions of the compound in the scientific literature. If I find a lot of studies, or even a handful, that report that it works, I usually come away thinking that it’s at least a promising candidate.

The trouble is, researchers rarely publish accounts of a drug failing. And according to a study published last week in Pediatrics, this publication bias is making antidepressants look like a better option for treating autism than they really are.

Although antidepressants have not been specifically approved by the U.S. Food and Drug Administration to treat autism spectrum disorders, many physicians prescribe them ‘off-label’ to alleviate the repetitive behaviors that are one of the disorder’s core features. An estimated 15 to 25 percent of children with autism take a popular type known as selective serotonin reuptake inhibitors, or SSRIs, such as Prozac or Celexa.

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SFARI, May 2012.

I’d like to be a mother—someday. Now is not a good time. I’m 28 years old, unmarried, and trying to build a freelance writing business from a small New York apartment.

I grew up in the wake of the feminist movement, and boy am I glad about that. Gender inequalities still exist, of course (ahem). But since grade school, my parents, teachers and favorite after-school-TV-show characters have encouraged me to invest in my education and career, just like any ambitious man. And I have.

Alas, biology still holds a trump card: my closing fertility window. By the time I’m 38, my bank account may be pregnant, but my eggs will be fossils. In last week’s issue of New Scientist, I wrote about a far-out experimental solution: freezing pieces of my ovary. The premise of the story was that if this technology ever gets off the ground, it could fulfill the original promise of the birth control pill, allowing women to make career decisions without the pressure of a ticking clock.

And it’s such a satisfying premise, isn’t it, especially for science-loving feminists like me. But after five months of airing it, triumphantly, to everyone I know, and thinking about their responses, my enthusiasm has waned. The cultural limits on the age of motherhood, I’m afraid, are far stronger than the biological ones.

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The Last Word on Nothing, April 2012.

Aspergillus niger, a type of black mold, “could probably be found on every table-top in the world,” says Richard Summerbell, research director of biotech Sporometrics in Toronto. It can cause everything from black fuzz on onion bulbs, to toenail infections, to painful and itchy swelling and discharge from the ears of children who stick dirty toys inside.

But A. niger, Summerbell points out, is also a workhorse of industry. For example, it can turn sugars into citric acid, the white powder that’s ubiquitous in foods, beverages, detergents, cosmetics, and pharmaceuticals. The fungus can also produce useful enzymes, such as alpha-galactosidase, the main ingredient in the anti-flatulence pill Beano.

See the other five creepies at…

Discover, April 2012.

The clock started ticking for T. Wilson in 2008, when she turned 36. She had been divorced for seven years, and as a trainee surgeon she barely had time to sleep, let alone date. But her waning fertility was not interested in reasons for putting off a pregnancy. Faced with the possibility that she might never be a mother, Wilson was afraid.

She wanted to preserve her fertility but didn’t like what technology had to offer. At that point, the preferred option for thousands of women all over the world was to freeze their eggs, but Wilson was daunted by the prospect of hormone injections, high cost and the time off work. Then she consulted Sherman Silber, a surgeon in St Louis, Missouri, who suggested she might like to bank one of her ovaries.

It is a highly experimental option.

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New Scientist, April 2012.

This past weekend I spent too many hours on Netflix watching Lie to Me, the Fox television drama that ran from 2009 to 2011. It’s a crime procedural (my favorite genre) about Dr. Cal Lightman, a psychologist who can spot liars by analyzing their body language and super-fast facial ticks, called microexpressions.

On the show, Lightman’s obsession with faces stems from a decades-old film of his mother recorded by her therapist. She had been institutionalized for depression, but on the film, she tells the therapist how good she feels after treatment, and how she longs to see her children. The therapist is convinced, allows her to go home, and she promptly commits suicide. After years of analyzing the footage, Lightman discovers that his mother’s face had shown flashes of agony while she lied about her happiness. He goes on to create a system for coding subtle facial expressions and launches a consulting firm, The Lightman Group, that helps police (and all sorts of other clients) detect when individuals are lying, and why.

It’s one of those shows that sticks with you, or with me, anyway. For the past few days I’ve been surreptitiously scrutinizing the faces of everyone I see—people exchanging small talk at a birthday party, people telling outrageous true stories on stage, my longtime friends, even my fiancé. Could I discover their hidden feelings just by paying closer attention? It’s tricky, of course, when you don’t know if someone is lying. But what about when you do know, like in the sad case of Mike Daisey?

Yesterday I hatched a plan: Learn the basics of the real science behind Lie and Me, then watch a bunch of old Daisey clips on YouTube and root out the signs of his deception.

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The Last Word on Nothing, March 2012.

If you ever visit Spitsbergen, Norway, one of the islands of Svalbard archipelago in the Arctic Circle, you might come across coal mines, snowmobile traffic, glaciers, polar bears and reindeer. Or a giant metal box sticking out of a mountain.

Four years ago this week, researchers erected the sturdy, if homely, box called the Svalbard Global Seed Vault, or less formally, the Doomsday Vault, to store a variety of frozen seeds in case of disaster. Nearly 25,000 new samples will be added to the cave this week, bringing the total inventory to more than 740,000 specimens. Covered in rock and permafrost, the vault will stay chilly even if the electricity goes out. It is, its backers say, “the ultimate insurance policy for the world’s food supply.”

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Smithsonian’s Surprising Science, February 2012.

Just over a year ago, I wrote about a handful of research groups creating robots that can engage children who have autism using speech, facial expressions or body movements. These ‘social’ bots ranged from a miniature dinosaur and a dancing yellow snowman to several sophisticated, full-size humanoids.

The eclectic collection now includes a boy that can sense when it’s touched, a floating female head that expresses a wide range of emotions and a low-cost fuzzy penguin that can track a child’s eye movements. Descriptions of all three appear in the latest conference proceedings of the IEEE Engineering in Medicine and Biology Society.

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SFARI, February 2012.